PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.005360.1
Common NameCsa_6G403070, LOC101209222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 299aa    MW: 32659.2 Da    PI: 7.408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.005360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-10181228455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cucsa.005360.1 181 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 228
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-18175245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-10175232No hitNo description
PROSITE profilePS5088815.828177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-18177245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPPTLINQP SFPTTPNANP NITPFNLSEI WHFPIHGGTS VEDSGPALAL RMAHLAHNLT  60
HFGDIAIGNP EVSPTDSLPL QLQQRLPHGH GVSKKRRDSD QDSPKVSSTS NGNNANANSS  120
AGNDSGGKRV KTAACRDDNH ESKTEAEPRS GKTEQNSQPT PEQPKQDYIH VRARRGQATD  180
SHSLAERARR EKISERMKIL QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA  240
VNSRIGPGIE VFPPKDYGQQ TFDTTGVAFG SQATREYSRG SSPEWLHMQI GGGFERTT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818221e-180LN681822.1 Cucumis melo genomic scaffold, anchoredscaffold00096.
GenBankLN7132571e-180LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146756.10.0PREDICTED: transcription factor bHLH79
SwissprotQ0JXE72e-71BPE_ARATH; Transcription factor BPE
TrEMBLA0A0A0KG050.0A0A0A0KG05_CUCSA; Uncharacterized protein
STRINGVIT_01s0026g01140.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-93BIG PETAL P
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]